My son and I are in the middle of a 4.0 conversion right now. on an 89YJ We started with a 99 WJ Grand Cherokee. Its more complicated because it OBD2 so we needed the entire harness from the WJ. Here is the thread.
http://www.jeepforum.com/forum/f22/...roject-whyj-swapping-wj-drivetrain-into-89-yj-let-fun-begin-2807826/index3.html
my son has not updated it in a while but we are near the point of putting the tub back on and have worked out most of the drive train nightmares. Even with an entire donor vehicle there is still a lot we had to get the drivetrain to work. We are 2 years into this swap so far. However we only spend our summer months working on it. Be prepared for a lot of work over just putting back in a 4.2
1. Motor Mounts (We used Brown dog with a 1 inch MML)
2. Clock ring adapter (Transfer case needed to be rotated to fit) Advanced adapters had the clock ring we needed. Note we also had to sleeve the shaft seal for the extra thikness of the clock ring advanced adapters had the that as well
3. Slip yoke eliminator. (Tom Woods) 2 reasons 1 shorten drivetrain length and deal with angle. 2 The wj got its VSS from its abs on tone rings from axle. We neither wanted the ABS and tone rings. By changing out the rear housing and slip yoke we were able to use the tranfercase now for our VSS we just need to calculate what speedo gear we need.
4. New front TC yoke. Rezeppa to conventional yoke. (Tom Woods)
5. 2 New double cardan drivesshafts Front and Rear (Tomwoods)
6. TC drop even with the MML we still had a fairly steep angle. We had installed an OME 2.5 inch lift. but do to the added length of the drive train we still needed a 3/4 inch drop
7. Axle shims (Rubicon express) Still to be installed. With using A double cardan shaft the rear pinion angle needs to be addressed. We ordered 6 and 8 degree steel shims. Once we get this set we will have the shims welded. We still have to work on either axle swap or gearing.
8. Fuel Pump. We are most likely choosing to go with an external on this. (Still to be done)
9. Fuel lines. Mix and match between yj lines and Wj lines
10. Brake lines all new
Still to be done items
11. New brake booster and proportioning valve (Still to be done) Thinking of going with a late model YJ 93 or newer
12. Power steering hoses. (Still to be done) Possibly New Durango steering box still to be determined
13. New radiator / Electric fan. Wj used an electric fan To wide to fit. Likely solution Ford Taurus fan (Still to be done)
14. AC condenser May be able to use the WJ condenser (Still to be done)
This will be where things will get interesting
15 Wiring harness and computer WJ
15. Gauge cluster. The gauge cluster from the wj is part of the ECU Its small enough that I think I can custom fit it. This will require a complete custom dash
16. WJ airbox This will replace the YJ one. Better AC Heat and Blower motor Plus it will wire in to the wj harness
17. Ignition and steering This will also come from the WJ.
18. updated headlights and signals etc.
So with all this still left to be done a 4.0 swap is not just plug and play.
an OBD1 solution from an XJ is an easier solution. However you will still need a late model YJ for the computer and gauges harness etc.
If you have any specific questions Let me know and I will answer whatever I can.
Most of my solutions came from this Forum.