Thank you for the diagram and responses. I believe this Jeep has only 1 field wire and the large charging wire. Battery is good, new and hods the charge. I'm more convinced than ever that the ECM is the culprit. I'll check the connectors and such again, but the spontaneous way that the charge stops seems like a faulty computer. Every time I disconnect and reconnect the battery terminal everything works perfectly, for a few starts, then back to no charge at all.
Does anyone have a lead on where to get the ECM part and programming it? The places I talked to were having a tough time figuring it out with the 3.0 L CRD engine.