I used 5 bolts on each side. It cleared with out a body lift, but was close. I have since added a 1" Daystar body lift, but not because of the engine or trans clearance.
I think you will have to get a center dump manifold for the left side.
'81 Scrambler w/ FI 360 AMC, 33x12.50 BFG M/T's, 5" of lift, ARB'd Dana 44's F & R, Dana 300 clocked & twin sticked w/4:1, Warn XD9000i, etc...
2002 Grand Cherokee Limited, 2008 Overland Grand Cherokee, a 1976 CJ-7 in pieces and 3 more off-brand 4x4s...............