For the sway bar links, you can remove the sway bar completely or pick up some JKS adjustable links.
You've installed a 2" lift without moving anything else, the CV axles and UCA's are going to be angled more. The angles aren't beyond what they should be with that lift. You can order a set of UCA for a lifted WK, but the CV angles your stuck with.
Crawl-Offroad.com-Boycott Paved Roads
2006 WK Limited Modified QT2
OME HD/RRO UCA/Wrangler MTRs on Moabs/JKS Rear Discos/Steel Armadillo Skids, Sliders,Front Shackles,Antenna Mount/Crawl Rear Skid