Finally found the problem with the pass side front window. What was happening was the window would do nothing with the driver side master switch, but, the door switch would lower the window, but not raise it. Turns out, the ground for the up position was broken at the driver's door hinge. I jumped the wire, and now everything works! One question for anyone that has fixed a broken wire in the door, how did you run the wire to the door? Thanks!
86 MJ LB Custom, 88 MJ SB Eliminator, 92 CJ9, 93 XJ Country, and 04 WJ Laredo/Limited