I hate to say it but there are a couple ways to get around it and none of them are cheap
. First, you could get two sets of upper doors, one set for the soft top, one set to match the hard top. Second, you could try to find a used set of full steel doors to use with the hard top. Another option is if the soft top is going to need replacing soon anyway, cancel the upper doors you already order if you can or send them back and order new softtop and upperdoor kit with hardware that gives you the same door pattern. good luck figuring out your problem.
95 yj Rio Grande 2.5L
31" BFG MUDS, 1"BL,2" homemade spring lift, 150W KC'S, KN Filter, both air restricters gone, track bars gone, quick discos, & high flow cat
"just like all addicts my need to satisfy my addiction far exceeds my wallet!!"