After finding some issues with melted cables in the wiring harness and splicing them and replacing them, the problem still existed. I then found that when the issue is happening being that it is intermittent the steering wheel controls dont work or control the wrong things such as CC makes the horn honk, horn does nothing etc.
After doing a bit of research I found that my clock spring was bad and unplugged it, immediatly the codes went away for TPS and the Jeep ran great. I found a new clock spring on Morris 4x4 (http://www.jeep4x4center.com/
) they seemed to be the only place to carry one with CC, although it came at a high cost.
So it seems after all of the diags and repairs this one thing was my cause for random stalling and high engine revs after 2 years. Bittersweet.